Enter the W-2 as is. Then when you go through the non-resident return, you will be asked what income belongs to that state. When TurboTax asks about your wage income - allocate zero wages to the nonresident state. TurboTax will show the amount on the W-2, enter zero when prompted. This will generate the refund from the nonresident state.
Your resident state will tax all of your wages anyway, so no need to change the w-2.
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