It sounds like somehow the Forms 1099-R got duplicated during the update. I suggest you review your original return to see if it was filled out correctly, compare it with the more recent version and investigate where there are differences. If you find the original return contained the proper income entries in the right places on the form, you probably don't need to amend the return. The original return would be the one filed with the IRS, the newer form would just be in TurboTax but wouldn't be filed anywhere. If you find the return needs to be amended, wait until your submitted return is processed as sometimes the IRS will make adjustments that can negate the need for filing the amended return.
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