OK, thanks for all the suggestions so far. I have one more piece of info I found from talking with the company. They claim that the 1099s aren't actually sent to the IRS, I had assumed they were. Is that info correct? If they're not sent to the IRS, then I have one copy that has the correct info, one with incorrect info. Can I just file with the correct one, and not have to explain anything? Or will the IRS have actually seen the second one with the incorrect figures and wonder why my numbers don't match theirs.
