It would be best to do them separately if you e-file your tax return. You may be Ok combing them as the total distribution will be correct, but if you e-file the return and one of them has a different federal ID number, it may cause a problem since the IRS will not be able to match that to the copy of Form 1099-R that they have received. Thus, it is possible they would send you a notice regarding the missing 1099 form entry after they process the return.
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