The IRS never writes letters in a tone that sounds overly friendly, but I wouldn't let that deter you from replying if you believe that doing so would allow you the credit to which you are entitled.
In this situation the likely best outcome is that you send the 1095-A, and they allow you to keep the credit. The worst outcome from replying would equal not replying, which would amount to acceptance of the change. It seems like it would be worthwhile to reply.
Be sure that when you reply you follow the instructions in the letter regarding where to send your reply and exactly what items to include (if it provides such instructions) to decrease the time it may take to process your response.
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