Assuming you have filed a second 1040X, it will be processed by the IRS based upon the order in which the amendments were sent. If you only filed one 1040X, and had 2 changes on the amended return, the IRS would evaluate the entire amended return as one review. It sounds like you are dealing with the latter. Based upon the IRS status you are seeing, it sounds like the IRS did adjust your refund.
The IRS will mail a letter to you explaining the difference between the amount on your amended return to the amount you actually received. Please see this link for more details on how amended returns are processed and what the different changes in status mean.
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