You said two different things there. You said your New York wages matched the wages in box 1 and then you said that your New York wages are more. They need to be the same.
The other state wages are where you have a problem. You need to file non-resident returns for those states. If you pay any tax in those states then you will be able to deduct that tax in New York. That's how you avoid the taxation by more than one state.
@bryanprior
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