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It wasn't the AGI that was corrected by the IRS. It was the tax payments that I had made. Went to my IRS.gov account for both myself and my spouse to verify the AGI that IRS has for both of us. It was what I expected for both of us. It seems that the e-File process itself is fouled up.

Does the AGI need to be clean of commas and decimal points? (i.e. "10,000." is incorrect)