TurboTax won't allow you to submit two Forms W-2 with the same EIN as it will appear to be an error. To resolve this, add the amounts in each box of the W-2 together and enter the totals in one W-2 form in TurboTax. Delete the second W-2 form in TurboTax.
It won't matter if there is a slight variation in the payer's name, and the control number isn't a required field. The control number field will accept any series of two sets of 5 digits. See this help article for more information.
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