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Thanks for your time. I just did the taxes regarding the above situation. At no point did the Turbo Tax program allow me to change filing status. It just took me through the States. I didn't actually file the taxes. It was a "Dry Run".  Married Filing Jointly for Federal, did NY, Non Resident and NJ. No need for Florida the program said. 

Since there is only one income, I will do it from the beginning MFS... and compare. Thanks