the S-Corp reports the income and expenses for the business it conducts. since you say it's different than your work as a contractor that would go on schedule C.
you need to get that S-corps EIN to those with which it does business. in the future do not give out your SSN for S-corp items. you can try requesting corrected 1099s (should be void for S-corp income) 1099s are not issued to corps in general.
see this link for options to report the 1099s for the s_corp
https://ttlc.intuit.com/community/business-taxes/discussion/a-1099misc-was-incorrectly-issued-to-my-...
