Hello @Holidaybakery1
Thank you for joining us today, we are so happy you are here!
To my understanding, you filed an extension online and you are preparing you taxes on the desktop software, but the desktop software is not syncing with the online extension. It is okay, as long as you have verification that your extensions were received by the IRS and whichever states you filed an extension with.
With that being said, if you made any payments to the IRS or any states, you will need to enter those under Deductions & Credits and the Taxes paid.
I hope this answers your question! Please let me know if you have any further questions, I will be happy to help!
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