filng rejected, but credit card charge went through

I transmitted a return in TurboTax with an authorization to charge the tax amount due to a credit card, and the charge immediately went through. But then the return was rejected as I had to add an additional form (1095-A for health insurance). I added the form in TurboTax, and it changed the amount due on my taxes to a higher number. But the program now wants me to re-submit the return authorizing the new TOTAL amount as a new credit card charge without giving me credit for the charge that has already gone through. Is there a way to change the amount to be charged to my credit card to the BALANCE of what I owe (i.e., the new total minus the amount already paid)? (I was thinking I could change the remittance choice to "I'll mail a check," submit the new return, and then mail in the balance owed... Would this work...?)