IRS rejected my 2022 1040X correcting HSA contribs. b/c no blank 5329. How do I refile showing correct contribs? Do I use previous 1040 with blank 5329?

I filed my 2022 return and didn't realize I reported contributions of $7,300 from W-2 and also on a separate form I put in $7,300 as well so my total contribution was mistakenly shown as $14,600.  I was taxed ~6% or $429.  I filed amended return and only included contributions from W2 at total of $7,300 and IRS sat on it for months and rejected it without telling me. I called them and they told me I need to resubmit with blank 5329.  Do I file another 1040X with a 5329 showing blank on 47, 48 and 49?  Or just file the Form 5329 by itself?  The IRS agent that helped me did not know what the proper way is to handle.  Thanks.