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I do not understand what you are not getting here.

My return was correct.
The IRS requires you to submit your previous years AGI in the Turbo Tax System for identity verification - that is it.
I submitted my previous years AGI (from my records). I know it was correct and further it was also posted on the IRS website under my account which I had logged in to (you do know you can log into your Tax Account on the IRS website ..) .

When I finally got an IRS agent (which took forever to get to someone) - he specifically asked me to check the IRS website for my account - I said I already did. He went to check as well and said yes you are correct those numbers should have worked. He requested to put me on hold while he checked another system and when he came back off of the hold he told me the other database is the one that electronic filing is compared to and that IRS did not have the proper information in that database.  That is how I know they have two different systems for the records.

So please tell me when everything was correct on my end; what on my Tax return filing should I have corrected ?