FORM 7203

When completing form 7203 for Scorp i currently have a loss which exceeds my stock basis. When i completed form 7203 it says that i have a carry over but when reviewing schedule E it shows the full entire loss and not the amount allowed based on stock basis. I have tried to fix it but it looks like the only way is to override it and just change the loss amount on schedule E. How can i resolve this issue?