It is possible that the taxes paid were just social security and Medicare taxes, not income taxes. So, they would be reported in boxes 4 and 6 on your W-2 form with nothing in box 2 (federal tax witheld.) If so, you are not getting double taxed, as the income associated with the stock vesting is reported once in box 1 on your W-2 form. You may have just not had any income taxes paid in to cover the tax on the income from vesting.
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