The 1099-MISC does not make you eligible for the QBI deduction.
If you have Section 199A dividends (which are REIT dividends) reported in box 5 of form 1099-DIV, you will be eligible for the QBI deduction as Section 199A dividends are QBI (qualified business income). You do not need to remove the QBI deduction. It is legitimate.
Please read this IRS document for more information.
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