In addition to Fanfare's instructions, you must check your payments to ensure the additional payment sent is listed. If you sent the payment after the return was filed and didn't include the payment, the software has no way of knowing that an additional payment was already sent in.
Column A will show the original return, and Column B will show the corrections, and Column C will show you the difference. Verify lines 12-17 match what was paid into the IRS. Line 16 will be specifically for taxes paid with the return or an extension.
For more information on filing an amended return, see the link below:
Amended Tax Return
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