I deferred my taxes and paid what it said I owed. Now I am getting a return, how can I now submit to ensure I have that money returned?

Before the tax deadline I did not have all of my banking information so my wife and I needed to defer submitting our 2018 taxes. At the time we owed to both federal and state, which we did not want to incur late fees on so we paid before the deadline. We just received our banking information and when we updated it in TurboTax we actual get some money back. How can we submit this without having to pay again and ensure we get our money that we already paid back?