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Thanks for the response. I already reached out to the employer a month back about the discrepancy and they have not responded yet. I reached 2022 HSA max limit of $7,300 by mid April 2022 and after excess contribution happened at end of April, it took the employer 4 months to pay me back the excess deduction, and then it took them another 3 months to deduct from my HSA account. I hope they fix the issue before the W2 is issued or at least by tax filing deadline in April 2023 but based on my experience so far I don't have high hopes this will be fixed soon.   I will certainly wait until April to see if this will be fixed but I am just trying to figure out how to proceed if this does not happen by April. Is going with W2 HSA contribution number fine even if it is different(more) than 5498-SA number?