How to file with TurboTax H&B after filing an extension directly with IRS, overpaid estimated taxes

I am using TurboTax Home and Business, filed a 2021 extension waiting for some amended 1099-B investment forms. Since I couldn't file the extension directly through TurboTax, I did so directly through the IRS website.

 

I am now ready to file, and will receive a refund due to overpaying on the estimated taxes. TurboTax will not recognize I filed an extension, or that I've already paid estimated taxes. I need to know what to do. Walk me through it.

 

Do I need to mark somewhere in Turbotax what I've already paid? Is there a separate form?

 

Do I just e-file and mark "pay by check" and hope the IRS refunds the difference when I don't send a check for what TurboTax now says I owe?