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The 10% early withdrawal penalty is not assessed when you withdraw funds from a tax deferred retirement account. The penalty is assessed on your tax return Form 1040 Line 59 as a tax liability. The taxes withheld from the withdrawal are entered on the tax return as a tax payment (just like from a W-2). If your total tax payments are greater than your total tax liabilities then you will receive a tax refund for the overpayment. If your total tax payments are less than your total tax liabilities you will have taxes owed.
To enter a form 1099-R -
Or enter 1099 r in the Search box located in the upper right of the program screen. Click on Jump to 1099 r
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