Where did you subtract it out (or how)? You should have entered it on schedule C line 27a as Other Expenses with a description. Did you put it there?
Go to Business tab- then Continue
Business Income and Expenses - Click the Start or Update button
Then click EDIT by the business name and the next screen should be a list of topics,
Business Profile, Income, Inventory/Cost of Goods Sold, Expenses, Assets, and Final Details last.
Under Business Expenses, Click Start or Update by Other common business expenses. You should see the list of expenses and amounts you entered.
Then click the start or update button by the expense you want to add or edit.
Other Miscellaneous Expenses is the 16th item under Expenses - Click the Start or Update button