you will enter both w-2's. in step by step mode, there should be a question as to whether you got another w-2 - answer yes. if forms mode there should be a link to add another w-2. or you could type w-2 in search box tobe able to enter second
When tax time comes around do NOT make the mistake of thinking you file a separate tax return for each W-2. ALL of your W-2's will go on the same tax return--even if you have a bunch of them.