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When filing Married Filing Separately (MFS), you each report only the portion actually paid, in your case, 50% each.
For Form 1098 entry:
Each of you can claim your half as long as your reported principal (half of $664,000) is under the $375,000 MFS limit.
Great - thank you! One follow-up question: my spouse's name is listed first and mine is listed second on Form 1098. His social security number is on Form 1098, but mine is not. Do I need to do anything to avoid an audit on my return since my social security number is not on Form 1098? For example, TurboTax has a box for, "Someone co-owns this loan, and I only pay a portion of it" - should I be checking that?
Yes, you can, it won't hurt, but you don't have to. Since you are filing separately, you can check the box that says someone co-owns this loan and I only pay a portion of it". You will then be able to enter what portion of the loan you pay. It should then give you a drop down and will let you select that your spouses social security number is on the 1098. This will produce a statement that is attached to your return saying you share this.
In the end, if you are married filing separately, you will need to include their SSN on your return and they will have to do the same with their return. So since your name is on the 1098, and your returns will be linked, if you don't check the box, it should not create a red flag.
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