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The 1099-SA is for reporting distributions from your HSA. Employer contributions will be on box 12 of your W-2 with the code W.
If you entered all the Box 12 info from your W-2, it shows you have an HSA. Unless you actually received a 1099-SA form (you took a distribution from your HSA), skip that and Continue in the section. You'll enter info about your HDHP insurance, and any contributions you made personally (not through your employer).
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