If I live in NY but work remotely for a company in WV, should they have been taking out NY tax as well as WV?

[Hal_Al]

They should not have been taking out WV tax.  You will have to file a non resident WV return to get a refund.

They may be unwilling to take out NY tax; which means you need to make quarterly estimated payments to NY.

If you sometime do physically work in WV, you will owe WV tax on your income for those days. You still file a non resident return, but you will not get a full refund. 

[ilovemydogs33]

Thank you! This is probably a dumb question but how do I make quarterly estimated payments?

[Hal_Al]

In the NY program, you'll reach a screen "A few things before we wrap up your state taxes". Scroll down to:

  -Other forms

     -Estimated Tax Payments for next year

TT will prepare the quarterly vouchers that can be mailed in with payments

You can probably make online payments at the NY Dept of Taxation and Finance Web site

https://www.tax.ny.gov/pit/