You can, when you file your Federal return it will ask how you want to pay your taxes due. Select to pay by check, that way it will let you file your Federal return without entering payment information. Then when you file your State, you can pay when you file.
Since you choose to pay your Federal taxes by check, when you are done, the program should print you a payment voucher (1040-V), you can then choose to mail in a check with the payment voucher when you are ready to pay, or go to the IRS website & pay online.
https://www.irs.gov/payments