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This previous answer explains how to enter a 60-day rollover into TT. Given your facts, if you qualify for the 60-day rule (e.g. only one of them in the year), it would appear that you would be taxed on the $1000 ($13k - $12k) that you took out of the account and did not put back into a qualified account. (Note the $520 withheld for taxes isn't relevant. It is money out and money in that matters. The $520 will count at taxes paid and you might get it back as a refund, but that depends upon the rest of your tax situation.)
https://ttlc.intuit.com/questions/3606665-how-can-i-enter-a-rolled-over-1099r-within-60-days
This previous answer explains how to enter a 60-day rollover into TT. Given your facts, if you qualify for the 60-day rule (e.g. only one of them in the year), it would appear that you would be taxed on the $1000 ($13k - $12k) that you took out of the account and did not put back into a qualified account. (Note the $520 withheld for taxes isn't relevant. It is money out and money in that matters. The $520 will count at taxes paid and you might get it back as a refund, but that depends upon the rest of your tax situation.)
https://ttlc.intuit.com/questions/3606665-how-can-i-enter-a-rolled-over-1099r-within-60-days
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