You are correct that New York does not tax employee pensions
from the federal government. See page 11 of New York
Publication 36 and the New York State Department of Taxation and Finance link.
Did you report your federal annuity payment as a regular
1099-R, or did you report it as a CSA 1099-R, Civil Service Annuity? See the
screenshot below. If you report it as a Civil Service Annuity, it should not be
taxed by New York State.
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