First, please look at this Maryland webpage, to see if there is anything here that might explain what you are seeing.
Next, enter your 1099-R (pension) information correctly on the federal return. Note that you may be asked for information on how much of the income and withholding applies to Maryland.
Then enter the Maryland interview. You will come to a screen entitled "Here's the income that Maryland handles differently". At the top will be your entry for the Maryland pension exclusion. Note that it is limited to $33,100. If you believe that the amount should be different, click on the Start button to see how TurboTax calculated the exclusion.
Come back if you still have questions.
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