Yes, you can deduct the unreimbursed business portion of the depreciation of your automobile, if there is a provision in the partnership agreement stipulating that you will not be reimbursed for this expense. This is reported as a reduction in the partnership income reported on Schedule E.
When you enter your K-1 for the partnership, you will reach the screen Describe the Partnership. Check that you are required to pay supplemental expenses on behalf of the LLC for which you are not reimbursed (see the screenshot). You will then be able to enter your vehicle information.
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