edited: 1/5/2017 4:36 PM EST:
It depends on if the 1099 you will receive was for done through your LLC or if it was received for work done outside of the LLC. If the 1099 was received for work done through the LLC then you would file a Schedule C on your personal tax return. Here is a great FAQ that explains the Schedule C in more detail: https://ttlc.intuit.com/replies/3302122
If the 1099 was received for work done outside of your LLC then you would file the 1099 under the 1099- MISC section of the program on your personal return.
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