When you say your transportation costs where reimbursed, I assume that means they were paid for under an accountability plan wherein your submitted your expenses and were reimbursed dollar for dollar for them.
If that is what happened, then you should not have been taxed on the benefits and they should not show as wages in box 1 of your W-2 form. In that case, you would not have to report the reimbursement on your federal or state tax return.
If the reimbursements were taxable because you did not have an accountability plan, then they should show in box 1 of your W-2 form and all you need to do to report them on your tax return would be to enter your W-2 form into TurboTax.
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