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Here is where to mail your Amend Federal Return and yes include the 1098-E form along with the return.
Department of the Treasury
Internal Revenue Service
Kansas City, MO 64999
If you are amending state return here are the mailing addresses for mailing in your New York State Form IT-201-X, Amended Resident Income Tax Return:
If enclosing a payment (check or money order):
STATE PROCESSING CENTER
PO BOX 15555
ALBANY NY 12212-5555
If not enclosing a payment:
STATE PROCESSING CENTER
PO BOX 61000
ALBANY NY 12261-0001
Instructions to Form IT-201-X:
https://www.tax.ny.gov/pdf/current_forms/it/it201xi.pdf
