You may use the software to prepare the return but choose the option to 'Print and Mail' because you will need to include your W7 Form.

To get past Turbo Tax asking for a SSN and be able to print the return, when asked to provide the spouse's Social Security number enter all 9's. After printing your tax return, you will have to erase or white-out the erroneous Social Security number entered for the spouse on Form 1040.  In the box for the spouse's SS number write in NRA (non-resident alien).