If you didn't live in, or work in, Indiana in all of 2018, no Indiana taxes should have been withheld from your pay. If your employer mistakenly withheld Indiana taxes, file a non-resident Indiana return, showing zero Indiana income, and the withheld taxes will be fully refunded to you.
Location of your employer's home office is irrelevant. Your state taxes are based on where you actually live and work.
**Answers are correct to the best of my ability but do not constitute tax or legal advice.